Archive for August, 2007

Intellectual Repentance, Pt. 5 (of 6)

Friday, August 31st, 2007

Photo of Dave RogstadAs we approach the end of our series on intellectual repentance, we continue to follow the apostle Paul’s admonition. Paul explains in the next several verses of his letter (1 Corinthians 2:9-13) how God has chosen to give us the wisdom and knowledge we need to know Him.

but just as it is written,

“things which eye has not seen and ear has not heard, and which have not entered the heart of man, all that God has prepared for those who love him.”

For to us God revealed them through the Spirit; for the Spirit searches all things, even the depths of God. For who among men knows the thoughts of a man except the spirit of the man which is in him? Even so the thoughts of God no one knows except the Spirit of God. Now we have received, not the spirit of the world, but the Spirit who is from God, so that we may know the things freely given to us by God, which things we also speak, not in words taught by human wisdom, but in those taught by the Spirit, combining spiritual thoughts with spiritual words. (New American Standard Bible)

What we as humans cannot perceive of God, God has revealed to us by His Spirit. To explain this, Paul uses an analogy in verse 11. He points out that in our normal interactions with one another, we as humans cannot know what is really going on in the mind of another person. Sometimes we can make pretty good guesses based on circumstances and body language. But, in the end, we don’t really know unless we can get into that other person’s mind, or unless that person can “give us his spirit.”

In the same way, we have no clue what is going on in the mind of God. We can learn a great deal about God from what He has revealed in His creation, but we can never really know Him in a deep and personal way unless He gives us His Spirit. But we learn in verse 12 that this is exactly what God has done for those who believe in Him. And we know from other Scriptures that this gift of His Spirit comes in the form of a new life as well as an enlightenment (greater understanding) of His Word. As a consequence, in his discussion of God’s wisdom, Paul does not use arguments that appeal to human wisdom, but instead appeal to a man’s conscience. Recall that Paul is trying to win hearts.

Next week we’ll wrap up the series by discussing the heart of the matter.

A Fork in the Road, Part 2 (of 2)

Thursday, August 30th, 2007

No Good Options for the Origin of Life

Photo of Fazale 'Fuz' RanaOrigin-of-life investigators adopt one of two fundamental approaches to explain life’s beginning: (1) replicator-first, and (2) metabolism-first scenarios. Chemist Robert Shapiro argues in the cover article of the June 2007 issue of Scientific American that the replicator-first approach to the origin-of-life is a failed paradigm. From his vantage point, metabolism-first scenarios offer the best hope to explain the origin of life.

Last week I explained how Shapiro reached this conclusion. This week I will briefly outline Shapiro’s proposal for life’s origin and point out some of the chemical difficulties with all metabolism-first models.

Metabolism-First

Some origin-of-life researchers postulate that once prebiotic materials formed, these relatively small molecules self-organized to form chemical cycles and networks of chemical reactions that—over time—gave rise to life’s metabolic systems. Once encapsulated or sequestered within a membrane, these complex, reticulated systems of reactions became the first prebionts.

According to this view, molecular self-replicators emerged later along with the enzymes that catalyzed each step in the chemical cycles and networks. Some proponents of metabolism-first scenarios maintain that these cycles and networks closely resembled the metabolic pathways found in the cell today. In other words, “metabolism recapitulates biogenesis.” Metabolism-first adherents suggest that either (1) individual chemical species that were part of these cycles and networks catalyzed these same reactions—a type of autocatalysis; or (2) that mineral surfaces catalyzed the protometabolic pathways.

Shapiro identifies five requirements for all metabolism-first scenarios.

  1. The emergence of a boundary to segregate the proto-metabolic pathways from the environment
  2. An energy source to power the proto-metabolic interactions
  3. A coupling mechanism that links the available energy to the proto-metabolic pathways
  4. The emergence of a chemical network comprised of interconnected cycles of reactions among small molecules
  5. A means for the network to grow and reproduce
Problems with Metabolism-First Scenarios

Even though seemingly plausible, metabolism-first models have only superficial merit.

  1. Most metabolism-first scenarios, including the one proposed by Robert Shapiro, are theoretical ideas with minimal, if any, experimental support. It is easy on paper to have hypothetical compound A convert into B, releasing energy that couples to the conversion of C to D and then D to E. And then have E catalyze the conversion of C to D and so forth. It is another matter to identify compounds that will behave that way in the laboratory, let alone in the environment of early Earth. Origin-of-life researcher Leslie Orgel points out that cycles and networks operating on the early Earth would have been highly susceptible to disruption by chemical interferents and competing side reactions.

    The validity of the metabolism-first approach to the origin of life can be established only through rigorous experimental demonstration under conditions that realistically simulate those of early Earth.

  2. Without enzymes, the rates of the chemical reactions among small molecules in chemical cycles and networks would be too slow to sustain living systems. The proto-metabolic pathways of metabolism-first scenarios require some sort of chemically assisted acceleration.

    Mineral surfaces, to date, are the only reasonable candidates for prebiotic catalysts. While mineral surfaces can catalyze specific reactions, it is unrealistic to think that a mineral will catalyze the range of chemical reactions required for cycles or chemical networks to operate. If a number of different types of mineral surfaces are evoked to increase the catalytic range, it creates an additional problem; namely, the need to efficiently transport “metabolites” from mineral site to mineral site. Under this scenario, it is difficult to envision how a chemical cycle could be maintained and evolve into a metabolic system contained within a protocell. In Orgel’s words, metabolism-first scenarios require an “appeal to magic,” a “series of remarkable coincidences,” a “near miracle.”

  3. Metabolism-first scenarios suffer from the chemical stability-instability paradox. Chemical compounds have to be reactive enough to take part in proto-metabolic cycles and networks. But this reactivity makes them susceptible to breakdown and decomposition. This susceptibility makes the chemical cycles and networks inherently unstable, frustrating all metabolism-first scenarios. On the other hand, chemical compounds stable enough to reasonably withstand degradation cannot enter into chemical cylces and networks because they are not chemically reactive enough.

  4. It is difficult to conceive how information-rich self-replicating molecules could emerge from a proto-metabolic system. It has to be the other way around. In fact, chemist Andy Pross has argued that life’s origin must be replicator-first, not metabolism-first for kinetics reasons.

One final point. Origin-of-life investigators Antonio Lazcano and Stanley L. Miller have identified another problem with metabolism-first scenarios, particularly for those that assert that protometabolic systems resemble the contemporary metabolism found in cells. Lazcano and Miller correctly point out that postulated prebiotic routes for key biomolecules dramatically differ from metabolic pathways that make the same compounds.

Even though on paper metabolism-first scenarios seem plausible, a thorough chemical analysis of these models exposes fundamental and intractable flaws. Metabolism-first scenarios are not viable pathways to life.

No Good Options for the Origin of Life

As I discussed last week, there are inherent problems for replicator-first scenarios. The same is true for metabolism-first scenarios. There are simply no chemical routes from a prebiotic soup to life. The only two options, replicator-first and metabolism-first, fail.

One might observe that the road to a naturalistic origin of life leads to a fork. The hall-of-fame catcher Yogi Berra is reputed to have said, “When you come to a fork in the road take it.” For origin-of-life researchers the fork in the road leads to a dead end.

For a detailed discussion of problems with evolutionary models for the origin of life, see the book I wrote with Hugh Ross, Origins of Life: Biblical and Evolutionary Models Face Off.

Hints of Newborn Universe Detected

Wednesday, August 29th, 2007

Photo of Jeff ZweerinkThe discovery of the cosmic microwave background (CMB) in 1965 and the subsequent detection of minute ripples in the CMB in 1994 both garnered Nobel Prizes. The former confirmed the big bang models of the universe while ruling out the steady state models. The latter demonstrated how an initially smooth universe developed structures like clusters and superclusters of galaxies. The ripple discovery also provided strong indicators of where the early clumpiness originates—a period of hyperfast expansion in the earliest fractions of time after the creation of the universe. Additionally, the CMB provides a powerful tool to understand the gross features of the universe, such as its geometry, content, and age.

A recent article in Science highlights another important discovery arising from measurements of the CMB. The fluctuations observed in the CMB represent a density map of the universe when it was 380,000 years old. Over the next billion years, the regions of higher density became the clusters and superclusters of galaxies observed today. The first phases of this growth involved the dark matter, which comprises 22% of the universe’s energy budget, forming a cosmic filamentary web. The visible structures astronomers see formed at the junctions of this dark matter web.

As the CMB photons pass through space on their journey to Earth, the gravity pull of clusters of galaxies distorts their path slightly. Detecting these distortions will allow cosmologists to reconstruct this dark matter web from the period before galaxies formed. The original article posted on the arXiv preprint server describes in more detail the first detection of these gravitational distortions of the CMB.

Although more-detailed observations of the CMB and the large scale structure in the universe will be needed to give a clear picture of the early dark matter web, detecting the distortions is the first critical step down that path. As the picture becomes clearer, our knowledge of the early universe will grow dramatically. Additionally, RTB predicts this new tool will illuminate further evidence of fine-tuning to make the universe habitable.